PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001193.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Nin-like
Protein Properties Length: 256aa    MW: 29237.1 Da    PI: 4.8827
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001193.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK50.54.1e-16210255550
                   RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 
                               s++++s  F+lp  +AAkeL+v+   L + C ++G+kRWP+Rk++
  Itr_sc001193.1_g00014.1 210 WSFDTISPLFHLPASQAAKELNVSEDKLTKMCKKLGVKRWPYRKLH 255
                              5899****************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.47186256IPR003035RWP-RK domain
PfamPF020421.7E-15212255IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MANHVPSSSH SDFIYSLDFE DTSICDKLNL DSLLEIENEL YKLLEHSDEA EPTVESDPLV  60
QVIEDVLFKP LSEIVIHKKK KNRVKKTFCD SKTVTKQMIS SRFHLPLEDE DEQAIPFPSP  120
DQDYRPVLEI TDNSALDDQF NILFSPSIGE SSHTTAPVCD FYQEIDRDLD FMNVMTGEHH  180
DVATDAPLNV KEVSKSAKTI VLDKRTTKPW SFDTISPLFH LPASQAAKEL NVSEDKLTKM  240
CKKLGVKRWP YRKLHT
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42742142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-11RWP-RK domain-containing protein